February 26, 2026
This guide shows how to bulk delete bill payments from QuickBooks Online using SaasAnt Transactions Online, so you can clean up issues like duplicate bill payments, bill payments created by mistake, payments recorded for the wrong vendor, wrong amounts, or payments applied to the wrong bills, without deleting them one by one.
SaasAnt Transactions Online lets you search with filters, review the matching bill payments, take a backup, and delete multiple bill payments in a few clicks.
You need:
SaasAnt Transactions Online installed from the QuickBooks App Store (30 day trial available)
A QuickBooks Online company connected to SaasAnt Transactions Online

Open the QuickBooks App Store
Install SaasAnt Transactions Online and connect your QuickBooks Online company
Launch SaasAnt Transactions Online

From the SaasAnt dashboard, select Delete
On the setup screen, select Ready to clean up

Choose one:
Delete by Reference: Use this when you already know the exact bill payment numbers or reference values you want to delete.
Delete by Searching: Use this when you want to find bill payments using filters (example: duplicates by vendor, amount, or bill payment number).
Select your method, then select Next.

Set Transaction Type to Bill Payments
Choose the Date Type you want to filter by:
Created Date: When the bill payment was first created in QuickBooks
Transaction Date: The payment date shown on the transaction
Last Updated Date: When the bill payment was last edited in QuickBooks
Enter the date range

Select Customize
Apply the filters you need, such as:
Total Amount (from - to): Use this to find bill payments within a specific total range, especially when duplicates share the same amount.
Vendor: Use this to pull bill payments for a specific vendor when you need to remove incorrect or duplicate payments.
Bill Payment No: Use this to locate bill payments by payment number when you already have it.
Detailed Report [Multi Lines]: Turn this on when you want to review line level details, especially when one bill payment is applied to multiple bills.
Select Search to load matching bill payments
Review the search results carefully
Select the bill payments you want to delete
Download a backup (CSV or Excel) before deleting
Select Delete
Confirm the delete in the pop-up
Important: Deleting is not reversible. Always take the backup first, and delete in smaller batches if you are removing a large volume.
After deletion, SaasAnt shows a Deletion Summary. This summary is available to download for up to 2 days and can be used for records and audit tracking.
Check these:
Confirm Date Type and date range match when the bill payments were created or edited
Remove filters one by one (vendor, bill payment no, total amount range) to broaden the search
Common reasons:
Some bill payments may be restricted by QuickBooks based on how they are linked or recorded
Try deleting a smaller selection to identify which specific bill payments are failing, then review those bill payments inside QuickBooks Online.
Deleting a bill payment can reopen bills and change vendor payable balances.
Before deleting, open the bill payment in QuickBooks Online and check which bills it is applied to, then proceed only if you are sure it should be removed.
You cannot undo a delete in QuickBooks Online. Use your SaasAnt backup file to re-create the bill payments if needed, or restore using your own backup process if available.